RiceGAAS: Rice Genome Automated Annotation System
RiceGAAS is a rice genome automated annotation system. This system integrates programs for prediction and analysis of protein-coding gene structure.
Integrated softwares are coding region prediction programs (
FGENESH, MZEF ),
splice site prediction programs (
homology search analysis programs (
tRNA gene prediction program (
repetitive DNA analysis programs (
signal scan search program (
Signal Scan ),
protein localization site prediction program (
PSORT ), and program of
classification and secondary structure prediction of membrane proteins (
Blast against full-length cDNA sequences of japonica rice is integrated. The full-length rice cDNA sequence is provided by KOME database.
Further, a unique function is automatically assigned for predicted gene by
GFSelector based on the protein homology of the gene.
|The errors of predicted genes' direction (+/-) in the Location tables were fixed. We are sorry for the inconvenience. Thank you for your cooperation. (2008, Jul 8)|
|This page is the entry for web service of RiceGAAS. The system supports computational analyses of your query genomic sequence and graphical result view. In order to use this service, you must register your e-mail address and password. This procedure is necessary to protect your data from the third party.|
The development of this system was supported by a grant from
the Ministry of Agriculture, Forestry and Fisheries of Japan
(Rice Genome Project SY1101, SY1103, GS-1302).
Users are asked to cite this URL (http://RiceGAAS.dna.affrc.go.jp/) or the
following article when publishing results, which have been obtained with the
system described here. Reference: Sakata,K., Nagamura,Y., Numa,H.,
Antonio,B.A., Nagasaki,H., Idonuma,A., Watanabe,W., Shimizu,Y., Horiuchi,I.,
Matsumoto,T., Sasaki,T. & Higo,K.:
"RiceGAAS: an automated annotation system and database for rice genome sequence"
, Nucleic Acids Res., 30: 98-102
For the detailed algorithm and applications, please refer to JARQ 43 (2), 103 - 113 (2009).
We welcome comments and suggestions on the system.
Send questions on server/software trouble to support staff at
Tutorial for rice genome database:
Dec 04, 2015